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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGATGGTTTAGGGAGTGCTATCAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctttctcggtctgttgcctcactcttgcattatatgaatcacactgtgctttgtcatttgtcgttctatttgattttgcattctgcacatatt...

Basic information

species Physcomitrella patens
transcript PP1S91_64V6.2
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828196|gb|BJ586208.1|BJ586208
EST:     CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
EST: gi|208373036|gb|DC948801.1|DC948801
EST:     CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
EST: gi|100413848|gb|BY975006.1|BY975006
EST:     CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTG
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTG
EST: gi|162197940|gb|FC373669.1|FC373669
EST:     CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
EST: gi|162197954|gb|FC373670.1|FC373670
EST:     CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
EST: gi|162196323|gb|FC374366.1|FC374366
EST:     CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
EST: gi|37845572|gb|BJ603580.1|BJ603580
EST:     CAAAGTTGCGGACTTCGTTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
EST: gi|162196322|gb|FC374365.1|FC374365
EST:     CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: CAAAGTTGCGGACTTCATTCCTGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
EST: gi|37827243|gb|BJ585255.1|BJ585255
EST:     TGCATTGCCATCTCTAGCCAACTGGGCAG                         TGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA
genomic: TGCATTGCCATCTCTAGCCAACTGGGCAGgtttgttctt ... cctggttcagTGCAAGGAAAGCAGGTGATGGAGTGTGCGTTGGCGGCAAGTCTATGCACTA