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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGGCCACCAAAATCGTCAAGGGCAACGACCTCCACGACGTGCGCCGCGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTGgtgagtggccttccgtgactctctctcgctctctttcttctggaatgctgttttgtttaacctctcgcatgttgtggccagggcaaaccactccccgtgt...

Basic information

species Physcomitrella patens
transcript PP1S91_64V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359168|gb|DC934671.1|DC934671
EST:     CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTG                         GTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
genomic: CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTGgtgagtggcc ... tctgtggcagGTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
EST: gi|18357834|gb|BJ189893.1|BJ189893
EST:     CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTG                         GTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
genomic: CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTGgtgagtggcc ... tctgtggcagGTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
EST: gi|18342552|gb|BJ174587.1|BJ174587
EST:     CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTG                         GTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
genomic: CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTGgtgagtggcc ... tctgtggcagGTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
EST: gi|18350831|gb|BJ182882.1|BJ182882
EST:     CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTG                         GTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
genomic: CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTGgtgagtggcc ... tctgtggcagGTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
EST: gi|18343749|gb|BJ175787.1|BJ175787
EST:     CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTG                         GTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG
genomic: CGTTTTCGACGCCATCGGCTTCCCTTTCCTCAATCGCTTGCTTCGAACTGgtgagtggcc ... tctgtggcagGTACAGGGCAGGCAAGAGCATCTGGTGGAGGGGAAGCAGTCGGACGCAATG