1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GATGTTCACAATATATGCAACGTTACCCATCTTTCAAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctcataccatagtgatctctcttttattcgtttgcaagtggaggttttggaattgatacacagtttgatcattacaccatcatatttcaggtat...
species | Physcomitrella patens |
transcript | PP1S91_64V6.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|37828196|gb|BJ586208.1|BJ586208
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|208373036|gb|DC948801.1|DC948801
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|162197940|gb|FC373669.1|FC373669
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|37822942|gb|BJ581008.1|BJ581008
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|37830159|gb|BJ588171.1|BJ588171
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|162196323|gb|FC374366.1|FC374366
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|37837195|gb|BJ595203.1|BJ595203
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGCGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|37824436|gb|BJ582502.1|BJ582502
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|37845572|gb|BJ603580.1|BJ603580
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|162196322|gb|FC374365.1|FC374365
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTTEST: gi|37827243|gb|BJ585255.1|BJ585255
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
EST: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACG ACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
genomic: AAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctca ... cctttgacagACCTATGACTGCAACAATGGAGGAGGTGACAAGAAACCCTTCGCTACAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTTCACAATATATGCAACGTTACCCATCTTTCAAAAATATGATCAAAGATTCAGCTTGGCTACAACGCTTTTTGGGGAAACGgtaattctcataccatagtgatctctcttttattcgtttgcaagtggaggttttggaattgatacacagtttgatcattacaccatcatatttcaggtat
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