1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...caatgaatctttactgttattgatgtttgtaaggatacaatgcgcaacatagtttgcaatactatttcatcttctcacgattgaattatttctgctgcagATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGTGCTCCAATAATCGATGCTTGTGACACACTTTTGAACCTCCTTATTAAG
species | Physcomitrella patens |
transcript | PP1S91_64V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTCAT-AGCAG A-TGTTCNA-TTNTGNGTGTAGCAACAGAANCAGGC-GGNTAGATTCGCGTEST: gi|162197954|gb|FC373670.1|FC373670
genomic: GTCATAAGCAGgtcagttcca ... tctgctgcagATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGT
EST: CAGAGCTTGATGGTTGCAAAGCTTTGGTTTTTTGTGGAGGTCATAAGCAG ATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGTEST: gi|162196323|gb|FC374366.1|FC374366
genomic: CAGAGCTTGATGGTTGCAAAGCTTTGGTTTTTTGTGGAGGTCATAAGCAGgtcagttcca ... tctgctgcagATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGT
EST: CAGAGCTTGATGGTTGCAAAGCTTTGGTTTTTTGTGGAGGTCATAAGCAG ATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGTEST: gi|100413848|gb|BY975006.1|BY975006
genomic: CAGAGCTTGATGGTTGCAAAGCTTTGGTTTTTTGTGGAGGTCATAAGCAGgtcagttcca ... tctgctgcagATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGT
EST: CAGAGCTTGATGGTTGCAAAGCTTTGGTTTTTTGTGGAGGTCATAAGCAG ATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGT
genomic: CAGAGCTTGATGGTTGCAAAGCTTTGGTTTTTTGTGGAGGTCATAAGCAGgtcagttcca ... tctgctgcagATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGT
aacatagtttgcaatactatttcatcttctcacgattgaattatttctgctgcagATTGTTCAATTTGTGCGTGTAGCAACAGAAACAGGCGGGTTAGATTCGCGTGCTCCAATAATCGATGCTTGTGACACACTTTTGAACCTCCTTATTAAG
ttctcac putative branch site (score: 2)
ttatttct putative PPT
attgaattatttct TA-rich tract