1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaatttttggttatactaaatcacgcttttggcgtaacaaggcttcttgtatggactatctccttttttcataatttgaaatatgcgttcttgtttgcagAGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATCTGCATATGCGGAAGGAGATGTCATCGGATTCTACATTAATCTACCCGAT
species | Physcomitrella patens |
transcript | PP1S91_41V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGACTTGCAGGCGCCTGTGGGATTTGATGCAAATAGCTATGCCTTCAG AGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATCEST: gi|162222254|gb|FC397690.1|FC397690
genomic: GGTGACTTGCAGGCGCCTGTGGGATTTGATGCAAATAGCTATGCCTTCAGgtactcctta ... ttgtttgcagAGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATC
EST: GGTGACTTGCAGGCGCCTGTGGGATTTGATGCAAATAGCTATGCCTTCAG AGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATCEST: gi|162255585|gb|FC431375.1|FC431375
genomic: GGTGACTTGCAGGCGCCTGTGGGATTTGATGCAAATAGCTATGCCTTCAGgtactcctta ... ttgtttgcagAGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATC
EST: GGTGACTTGCAGGCGCCTGTGGGATTTGATGCAAATAGCTATGCCTTCAG AGACGTCGATGGAAGTAA-GTACATCAAGCGATTCGAGAGCCATATGCATC
genomic: GGTGACTTGCAGGCGCCTGTGGGATTTGATGCAAATAGCTATGCCTTCAGgtactcctta ... ttgtttgcagAGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATC
cttgtatggactatctccttttttcataatttgaaatatgcgttcttgtttgcagAGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATCTGCATATGCGGAAGGAGATGTCATCGGATTCTACATTAATCTACCCGAT
ttcttgttt CT-rich tract
ttttttcataatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttttggttatactaaatcacgcttttggcgtaacaaggcttcttgtatggactatctccttttttcataatttgaaatatgcgttcttgtttgcagAGACGTCGATGGAAGTAAAGTACATCAAGCGATTCGAGAGCCATATGCATCTGCATATGCGGAAGGAGATGTCATCGGATTCTACATTAATCTACCCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG