1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcggtcaacttctaggtcaagtttaacatgttggatttttttgtccgttaaggtgtcgatcatcgaatgacaacattacgtgtgtaccttgatatcctagGTGATGAAACAAATGGTGCAAGGATGGTGCGAGTCGGTGTGAAGAGGAATGGGTCTGCAGCTTTGGATAATACTGATGGTGCAGGGGGTGAGGTGGTTGT
species | Physcomitrella patens |
transcript | PP1S91_41V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAAGCGGAGGGCGAAGAACAAAGACCAGCCGGAGAACAGCCAGCTG GTGATGAAACAAATGGTGCAAGGATGGTGCGAGTCGGTGTGAAGAGGAATGEST: gi|162255585|gb|FC431375.1|FC431375
genomic: TGGAGAAGCGGAGGGCGAAGAACAAAGACCAGCCGGAGAACAGCCAGCTGgtacgaaata ... gatatcctagGTGATGAAACAAATGGTGCAAGGATGGTGCGAGTCGGTGTGAAGAGGAATG
EST: TGGAGAAGCGGAGGGCGAAGAACAAAGACCAGCCGGAGAACAGCCAGCTG GTGATGAAACAAATGGTGCAAGGATGGTGCGAGTCGGTGTGAAGAGGAATG
genomic: TGGAGAAGCGGAGGGCGAAGAACAAAGACCAGCCGGAGAACAGCCAGCTGgtacgaaata ... gatatcctagGTGATGAAACAAATGGTGCAAGGATGGTGCGAGTCGGTGTGAAGAGGAATG
cgttaaggtgtcgatcatcgaatgacaacattacgtgtgtaccttgatatcctagGTGATGAAACAAATGGTGCAAGGATGGTGCGAGTCGGTGTGAAGAGGAATGGGTCTGCAGCTTTGGATAATACTGATGGTGCAGGGGGTGAGGTGGTTGT
ccttgat putative branch site (score: 5)
aacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcggtcaacttctaggtcaagtttaacatgttggatttttttgtccgttaaggtgtcgatcatcgaatgacaacattacgtgtgtaccttgatatcctagGTGATGAAACAAATGGTGCAAGGATGGTGCGAGTCGGTGTGAAGAGGAATGGGTCTGCAGCTTTGGATAATACTGATGGTGCAGGGGGTGAGGTGGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT