1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gacccgtaaaacgttccatcaaatgtgctgattgagccgtgctaagtatcaagtaccaagcatccactccaataaattgaaccttgtgcacattgtgcagGATGTATTCGACCTACCTTTTCATATGGCGAGAGATCAGATTGGAGAAAGCTTACGTGCTAAAATGTCTACCATTAAA
species | Physcomitrella patens |
transcript | PP1S91_39V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TAAGCTCTCACGAACATGAACCACCTGCCACACCCCTGGGAGGCCGAACG GATGTATTCGACCTACCTTTTCATATGGCGAGAGATCAGATTGGAGAAAGCEST: gi|37852551|gb|BJ610559.1|BJ610559
genomic: TAAGCTCTCACGAACATGAACCACCTGCCACACCCCTGGGAGGCCGAACGgtaattgcaa ... cattgtgcagGATGTATTCGACCTACCTTTTCATATGGCGAGAGATCAGATTGGAGAAAGC
EST: TAAGCTCTCACGAACATGAACCACCTGCCACACCCCTGGGAGGCCGAACG GATGTATTCGACCTACCTTTTCATATGGCGAGAGATCAGATTGGAGAAAGC
genomic: TAAGCTCTCACGAACATGAACCACCTGCCACACCCCTGGGAGGCCGAACGgtaattgcaa ... cattgtgcagGATGTATTCGACCTACCTTTTCATATGGCGAGAGATCAGATTGGAGAAAGC
gtatcaagtaccaagcatccactccaataaattgaaccttgtgcacattgtgcagGATGTATTCGACCTACCTTTTCATATGGCGAGAGATCAGATTGGAGAAAGCTTACGTGCTAAAATGTCTACCATTAAA
aataaattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacccgtaaaacgttccatcaaatgtgctgattgagccgtgctaagtatcaagtaccaagcatccactccaataaattgaaccttgtgcacattgtgcagGATGTATTCGACCTACCTTTTCATATGGCGAGAGATCAGATTGGAGAAAGCTTACGTGCTAAAATGTCTACCATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA