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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaagcgaaaaccgaggcgatgttttccatgcatgggaagatagtgatgttgtaggttggatttagctgtgtgttttccatcgttggtggtgatt...

Basic information

species Physcomitrella patens
transcript PP1S91_243V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_243V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EDO96600 (Chlamydomonas reinhardtii), 5'ss of exon 7
CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaagcgaaa--accgaggcgatgttttccatgcatgggaagatagtga--tgttg--taggttggatttagctgtgtgttttccatcgttggtggtgatt-------------------
||| ||||| || ||||||||||||||||| |||||||| || |||||||||||    || ||  | |||||||||||||| || ||      ||| |||||| |||    | |   || |  | | ||    ||  |  | ||| |  ||  |  |||||   ||   ||    |||| |  |   | |  |||| |   ||  |                   
CGAGATTGACCGGTACGCCAGCGAGAACGTGAACAAGCTGCTGGTGGGCAACAAGAGCGACCTGACGTCGAAGAAGGTGGTTGAGTACTCCGTCGCCAAGgtgcgtgtgctggacgcacgggtggggtgacggcccgggttcggaggccagccaagtgttggccagccgggtgccagcttttggggctgccgcgttcgacctgcatgtcttactactctatgcag

upper sequence: PP1S91_243V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ23285 (Selaginella moellendorffii), 5'ss of exon 6
CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaagcgaaaaccgaggcgatgttttccatgcatgggaagatagtgatgttgtaggttggatttagctgtgtgttttccatcgttggtggtgatt
||| || ||||| ||||| |||||||||||||||||||||||||| |||||||| |  ||| |  || | ||||| || ||||||||| | || || ||||||         | |||    |  ||  ||||  |  |  | |  |     |  |  |   || |    ||                             
CGAGATCGATCGCTACGCGAGCGAGAACGTAAACAAGCTTCTCGTCGGCAACAAGTGCGATTTAACTGCAAAGAAAGTCGTGGATTATCAGACTGCCAAGgtg---------acaacttctgttattctttctttctactgtacaaagtaaaaatcttttcttcgtgacag-----------------------------

upper sequence: PP1S91_243V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: EFJ20286 (Selaginella moellendorffii), 5'ss of exon 6
CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaagcgaaaaccgaggcgatgttttccatgcatgggaagatagtgatgttgtaggttggatttagctgtgtgttttccatcgttggtggtgatt
||| || ||||| ||||| |||||||||||||||||||||||||| |||||||| |  |||||  || ||||||| || ||||||||  |||| || ||||||       | ||| |       ||  ||||| |  |  | |  | ||| |   | |   || |    ||                             
CGAGATCGATCGCTACGCGAGCGAGAACGTAAACAAGCTTCTCGTCGGCAACAAGTGCGATCTAACTGCGAAGAAAGTCGTGGATTACCAAACTGCCAAGgtg------acaaaatct---cttattctttccgtctactgtacaa-agtaaaaatctttcttcgtgacag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208366025|gb|DC951120.1|DC951120
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208377196|gb|DC932346.1|DC932346
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTANAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208372871|gb|DC956272.1|DC956272
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|100365370|gb|BY966564.1|BY966564
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAA                         GCATTTGGCGATGAGATTGGGATTCCTTTCCTAGAAACA-GTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208359445|gb|DC953998.1|DC953998
EST:     ACAAATCAGATCTTGCTTCGNAGNAGGTGGTGGATTATGNAACCGCTAAG                         NCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208394189|gb|DC933857.1|DC933857
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|100427223|gb|BY959037.1|BY959037
EST:     CAAATCAGATCTTGCTTCGAAGAANNNNNNNNATTATGAAACCGCCTA-G                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAA
genomic: CAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGC-TAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAA
EST: gi|208359075|gb|DC957823.1|DC957823
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|162190479|gb|FC365701.1|FC365701
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|162150706|gb|FC327602.1|FC327602
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|100429270|gb|BY978026.1|BY978026
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTTTAGAA-CA-GTGCAAAGA
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTT--AGAAACAAGTGCAAAGA
EST: gi|162261631|gb|FC438064.1|FC438064
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208367423|gb|DC951313.1|DC951313
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|100375926|gb|BY968230.1|BY968230
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGNCAA-GAA
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTG-CAAAGAA
EST: gi|208376325|gb|DC940995.1|DC940995
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208370470|gb|DC952173.1|DC952173
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208366816|gb|DC940130.1|DC940130
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|100405284|gb|BY955448.1|BY955448
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAANCA-GTGCAAAGAA
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAA-CAAGTGCAAAGAA
EST: gi|67692438|gb|BJ952671.1|BJ952671
EST:     GGTGGATTATGNAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: GGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|162242155|gb|FC415820.1|FC415820
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208381304|gb|DC919194.1|DC919194
EST:     AAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: AAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|162150705|gb|FC327601.1|FC327601
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|162279565|gb|FC455850.1|FC455850
EST:     TTCGAAGAAGGTGGTGGATTATTAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: TTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208362953|gb|DC946878.1|DC946878
EST:     ACNAATCAGATCNTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|162173544|gb|FC350118.1|FC350118
EST:     GAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: GAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|67508428|gb|BJ941295.1|BJ941295
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|100388728|gb|BY970876.1|BY970876
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208354508|gb|DC953872.1|DC953872
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208359364|gb|DC939117.1|DC939117
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208369746|gb|DC941008.1|DC941008
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|67569192|gb|BJ942016.1|BJ942016
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|67728237|gb|BJ978496.1|BJ978496
EST:     ACAAGTCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208373179|gb|DC944892.1|DC944892
EST:     ACNANTCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCA-TTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208367873|gb|DC955336.1|DC955336
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208369487|gb|DC952128.1|DC952128
EST:     GAAGGTGGTGGATTATGNAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: GAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208395629|gb|DC920247.1|DC920247
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|67571758|gb|BJ944582.1|BJ944582
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208386592|gb|DC952773.1|DC952773
EST:     ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
genomic: ACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAAT
EST: gi|208372194|gb|DC947997.1|DC947997
EST:     GAAGGTNGTGGATTATGAAACCCGNTAAG                         GCATTTGCCGATGAGATTGGAATTCCTTTTTTAGAAACAAGTGCAAAGAA
genomic: GAAGGTGGTGGATTATGAAA-CCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 36

CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaag ... ttttgggcagGCATTTGCCGATGAGATTGGAATTCCTTTCTTAGAAACAAGTGCAAAGAATGCTACCAACGTGGAGCAAGCTTTCATGACCATGGCAGCTGAGATCAAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCGTGGGCAACAAATCAGATCTTGCTTCGAAGAAGGTGGTGGATTATGAAACCGCTAAGgtgtgtgaagcgaaaaccgaggcgatgttttccatgcatgggaagatagtgatgttgtaggttggatttagctgtgtgttttccatcgttggtggtgatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA