1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtcatgtcaatggatggcttatatggagcaaacgggacatatctcggtcttacttggattcggattctgacaaagtctcgtatttgttattgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGTTGAACGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCG
species | Physcomitrella patens |
transcript | PP1S91_243V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208377196|gb|DC932346.1|DC932346
genomic: CCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208372871|gb|DC956272.1|DC956272
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: CCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|100365370|gb|BY966564.1|BY966564
genomic: CCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208394189|gb|DC933857.1|DC933857
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|100427223|gb|BY959037.1|BY959037
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208359075|gb|DC957823.1|DC957823
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|162190479|gb|FC365701.1|FC365701
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|162150706|gb|FC327602.1|FC327602
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|100429270|gb|BY978026.1|BY978026
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208367423|gb|DC951313.1|DC951313
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|100375926|gb|BY968230.1|BY968230
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|18342722|gb|BJ174757.1|BJ174757
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208376325|gb|DC940995.1|DC940995
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208370470|gb|DC952173.1|DC952173
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: CCACGGAATCATT GTTGTTTATGATGTGACAGACCNAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208366816|gb|DC940130.1|DC940130
genomic: CCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|100435552|gb|BY960970.1|BY960970
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCCAGAGAGCTTNNCA-CA-CGTGAAGCAATEST: gi|100405284|gb|BY955448.1|BY955448
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTT--CAACAACGTGAAGCAAT
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|67508428|gb|BJ941295.1|BJ941295
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|100388728|gb|BY970876.1|BY970876
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208354508|gb|DC953872.1|DC953872
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208359364|gb|DC939117.1|DC939117
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|208369746|gb|DC941008.1|DC941008
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|67569192|gb|BJ942016.1|BJ942016
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|67728237|gb|BJ978496.1|BJ978496
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: CCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGEST: gi|18330928|gb|BJ162934.1|BJ162934
genomic: CCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGEST: gi|67571758|gb|BJ944582.1|BJ944582
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAG
EST: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATT GTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
genomic: GGTTCCGGACCATCACAAGTAGCTACTATCGTGGAGCCCACGGAATCATTgtgagaaata ... ttgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGG
cggtcttacttggattcggattctgacaaagtctcgtatttgttattgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGTTGAACGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCG
tatttgttattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcatgtcaatggatggcttatatggagcaaacgggacatatctcggtcttacttggattcggattctgacaaagtctcgtatttgttattgattgcagGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAACGTGAAGCAATGGTTGAACGAAATTGATCGATACGCCAGCGAGAACGTAAACAAGCTTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT