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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtaagattttctgctctacaaatggattgaatcattttaaccagaataattgtggcatgcgaatttatttaatgcacttaagtttaatttgtggtataagaaaaaaattgcgacaaatcaacttaccagctccgcactgtcggtatatcgattgtgcagGGCAGCAGCTCAGAGGTGGAATGGGGAGGGGTCATTGTTATTCACATCTAGCAGTTTTGTTTATGACGTTCATGACAATGGCCATTGTGATGAG

Basic information

species Physcomitrella patens
transcript PP1S91_170V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67508687|gb|BJ941548.1|BJ941548
EST:     ATATTCTGCGCTCCACCGTCTGGTAGTGAGAATTACGCAGCAGAAGTCAG                         GGCAGCAGCTCAGAGGTGGAATGGGGAGGGGTCATTGTTATTCACATCTAG
genomic: ATATTCTGCGCTCCACCGTCTGGTAGTGAGAATTACGCAGCAGAAGTCAGgttgtaagat ... gattgtgcagGGCAGCAGCTCAGAGGTGGAATGGGGAGGGGTCATTGTTATTCACATCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgcgacaaatcaacttaccagctccgcactgtcggtatatcgattgtgcagGGCAGCAGCTCAGAGGTGGAATGGGGAGGGGTCATTGTTATTCACATCTAGCAGTTTTGTTTATGACGTTCATGACAATGGCCATTGTGATGAG
               aacttac  putative branch site (score: 2)
          aaatcaa  TA-rich tract