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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGAAGAAAGGAGTCAAATTACGACCAACTCCCATGCTGATTTGCTGGTTGTTGGACCTGGAGTGCTTGGTAGTCTTGTAGGCCGACGTTGGTTAGAGgtaggagacctgcgtttggaatcacgcttcatcattaagcccttttattgtgatgcgtatcgatttcaaagcgatgtagcttggttcacttagttggagt...

Basic information

species Physcomitrella patens
transcript PP1S91_170V6.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_170V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os01g26920.2 (Oryza sativa), 5'ss of exon 2
TAACGAAGAAAGGAGTCAAATTACGACCAACTC--CCATGCTGATTTGCTGGTTGTTGGACCTGGAGTGCTTGGTAGTCTTGTAGGCCGACGTTGGTTAGAGgtaggagacctgcgtt--tgga--atcacgcttcatcattaagcccttttattgtgatgcgtatcgatttcaaagcgatgtagcttggttcacttagttggagt
  | |    |||  | |    | ||||    |   | |    ||||||||| ||||||| ||||||||||||||| | || ||||        |||   ||||||  |        ||    ||   | |  ||  ||| | |     ||   |||||   | ||| | ||| ||        | | |  | | |||   | |   
--AGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGgtattattatcagattgcccgattgttatactctatc-tcagttatttaccttgtgtctcctattggtttaaacttcgaaaaccatattcctctttcatcg---

upper sequence: PP1S91_170V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: 13113.m00225 (Oryza sativa), 5'ss of exon 2
TAACGAAGAAAGGAGTCAAATTACGACCAACTC--CCATGCTGATTTGCTGGTTGTTGGACCTGGAGTGCTTGGTAGTCTTGTAGGCCGACGTTGGTTAGAGgtaggagacctgcgtt--tgga--atcacgcttcatcattaagcccttttattgtgatgcgtatcgatttcaaagcgatgtagcttggttcacttagttggagt
  | |    |||  | |    | ||||    |   | |    ||||||||| ||||||| ||||||||||||||| | || ||||        |||   ||||||  |        ||    ||   | |  ||  ||| | |     ||   |||||   | ||| | ||| ||        | | |  | | |||   | |   
--AGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGgtattattatcagattgcccgattgttatactctatc-tcagttatttaccttgtgtcccctattggtttaaacttcgaaaaccatattcctctttcatcg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67508687|gb|BJ941548.1|BJ941548
EST:     TTGTTGGACCTGGAGTGCTTGGTAGTCTTGTAGGCCGACGTTGGTTAGAG                         CTGCATGAAGGGTGTAGAGTTGTGGGACAGACGAATACCACCAACCGACAT
genomic: TTGTTGGACCTGGAGTGCTTGGTAGTCTTGTAGGCCGACGTTGGTTAGAGgtaggagacc ... tggtgttcagCTGCATGAAGGGTGTAGAGTTGTGGGACAGACGAATACCACCAACCGACAT