1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtaaccatttgttgttgtagagtttgtatggatgatattttctgatgtccatgtaatgacaaaaggccaacaagttgaattgttctgtgttgtactgcagGCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGATTAAAGTTCTTCAACCAGGAGTCTATCAGTACAAGTTTTGGGTGGATGGAGTGTGGAGGTAC
species | Physcomitrella patens |
transcript | PP1S91_154V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGCGGCAATGTTGGTGTCATAGGCTCATGGGATAACTGGNCAA-CAAG GCAACCACTTCAGAAGTCTGGTAGGGACTTEST: gi|208365570|gb|DC944082.1|DC944082
genomic: GTGGCGGCAATGTTGGTGTCATAGGCTCATGGGATAACTGG-CAAACAAGgtgcggatct ... tgtactgcagGCAACCACTTCAGAGGTCTGGTAGGGACTT
EST: GGTGGCGGCAATGTTGGTGTCATAGGCTCATGGGATAACTGGCAAACAAG GCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGATTAAAGTTCTTCAEST: gi|100364891|gb|BY947960.1|BY947960
genomic: GGTGGCGGCAATGTTGGTGTCATAGGCTCATGGGATAACTGGCAAACAAGgtgcggatct ... tgtactgcagGCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGATTAAAGTTCTTCA
EST: GTGGCGGCAATGTTGGTGTCATAGGCTCATGGGATAACTGGCAAAACAGG GCA-CCACTTCAGAGGTCTGGTAGGGACTTCACATTGAEST: gi|162179719|gb|FC355777.1|FC355777
genomic: GTGGCGGCAATGTTGGTGTCATAGGCTCATGGGATAACTGGCAAA-CAAGgtgcggatct ... tgtactgcagGCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGA
EST: CTGGCAAACAAG GCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGATTAAAGTTCTTCA
genomic: CTGGCAAACAAGgtgcggatct ... tgtactgcagGCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGATTAAAGTTCTTCA
tgtccatgtaatgacaaaaggccaacaagttgaattgttctgtgttgtactgcagGCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGATTAAAGTTCTTCAACCAGGAGTCTATCAGTACAAGTTTTGGGTGGATGGAGTGTGGAGGTAC
atgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccatttgttgttgtagagtttgtatggatgatattttctgatgtccatgtaatgacaaaaggccaacaagttgaattgttctgtgttgtactgcagGCAACCACTTCAGAGGTCTGGTAGGGACTTCACATTGATTAAAGTTCTTCAACCAGGAGTCTATCAGTACAAGTTTTGGGTGGATGGAGTGTGGAGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG