1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgatggtacttaacttataacgttatcggaggtggtaaatcgtttgatctcattttcctgcttctcatctgaatagagagatgtggtttgtatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATATGCACAGACGCAGCGTGCTTCCCAACAAGCTTATTATGAGACGAGTTTGT
species | Physcomitrella patens |
transcript | PP1S91_154V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAG GTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATATEST: gi|100449053|gb|CJ973352.1|CJ973352
genomic: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAGgtcgggatcc ... tatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATAT
EST: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAG GTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGNAGGATATEST: gi|100364891|gb|BY947960.1|BY947960
genomic: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAGgtcgggatcc ... tatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATAT
EST: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAG GTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATATEST: gi|100438814|gb|BY961816.1|BY961816
genomic: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAGgtcgggatcc ... tatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATAT
EST: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAG GTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATATEST: gi|100403085|gb|BY973499.1|BY973499
genomic: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAGgtcgggatcc ... tatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATAT
EST: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAG GTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATATEST: gi|100441576|gb|BY980998.1|BY980998
genomic: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAGgtcgggatcc ... tatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATAT
EST: TGAAAAGCCC-GGCAGCGGCGCGCGATCGCCTCTCATGTTCACTCCTCAG GTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTEST: gi|100369950|gb|BY967455.1|BY967455
genomic: TGAAA-GCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAGgtcgggatcc ... tatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTT
EST: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAG GTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATAT
genomic: CTGAAAGCCCCGGCAGCGCCGCGCGATCGCCTCTCATGTTCACTCCTCAGgtcgggatcc ... tatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATAT
gatctcattttcctgcttctcatctgaatagagagatgtggtttgtatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATATGCACAGACGCAGCGTGCTTCCCAACAAGCTTATTATGAGACGAGTTTGT
gtttgat putative branch site (score: 7)
tttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatggtacttaacttataacgttatcggaggtggtaaatcgtttgatctcattttcctgcttctcatctgaatagagagatgtggtttgtatgttgcagGTGCCTATGGTGCCAATCTCTAAACCAAATGAGTTGAGTTTGGGAGGATATGCACAGACGCAGCGTGCTTCCCAACAAGCTTATTATGAGACGAGTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT