Sequence
atgc intronic sequence ATGC exonic sequencegtgagaccgcttcctcgcttatcacatgccattgctattgagatcacgcatcacaatacccaccatactcgtggaattcgtatgtttacacaagctgttcgttttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGGTATTTGAGACTCAACCCCAGTGCTTCAGCTCCCACTCTCGTCGTCGGAG
Basic information
species | Physcomitrella patens |
transcript | PP1S84_136V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100362026|gb|BY947746.1|BY947746EST: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAG TATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGG
genomic: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAGgtgagaccgc ... tttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGG
EST:
gi|162193122|gb|FC371988.1|FC371988EST: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAG TATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGG
genomic: CATTCAACCCTGCAAAGTCGAGGCTTGCTCTTGAAGAGAAAAACATCAAGgtgagaccgc ... tttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acccaccatactcgtggaattcgtatgtttacacaagctgttcgttttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGGTATTTGAGACTCAACCCCAGTGCTTCAGCTCCCACTCTCGTCGTCGGAG
ttcgtttt CT-rich tract
tatgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaccgcttcctcgcttatcacatgccattgctattgagatcacgcatcacaatacccaccatactcgtggaattcgtatgtttacacaagctgttcgttttgttgtagTATGTTGAAACGAAGATCGACCTCTTTAATGGTCAGTCTCTGGAGCCATGGTATTTGAGACTCAACCCCAGTGCTTCAGCTCCCACTCTCGTCGTCGGAG
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