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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCCCGGAGTGTTCGTGCGCCTGTAAGCCCACGAACCCTACAGAGCCGGTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccccactctttcagcagactaaaataggttttgcgtttaggttagacctaatcggacagcatcacttaacactgtcataagtgttatgaaacag

Basic information

species Physcomitrella patens
transcript PP1S84_123V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162186801|gb|FC363045.1|FC363045
EST:     GTTTCATCTGACGAACCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC                         GCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
EST: gi|162167013|gb|FC342475.1|FC342475
EST:     GTTTCATCTGACGAACCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC                         GCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
EST: gi|19788931|gb|BQ041005.1|BQ041005
EST:     GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC                         GCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
EST: gi|162246628|gb|FC425221.1|FC425221
EST:     GTTTCATCTGACGAACCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC                         GCGCACACGCTACGA
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGA