1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtaccccactctttcagcagactaaaataggttttgcgtttaggttagacctaatcggacagcatcacttaacactgtcataagtgttatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCCGCCTCCTCCTCCCAGTGCGCCGCATCTCATGTACTGCACCCAGGACATG
species | Physcomitrella patens |
transcript | PP1S84_123V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTCATCTGACGAACCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC GCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCCEST: gi|162167013|gb|FC342475.1|FC342475
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
EST: GTTTCATCTGACGAACCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC GCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCCEST: gi|19788931|gb|BQ041005.1|BQ041005
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
EST: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC GCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCCEST: gi|162246628|gb|FC425221.1|FC425221
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCC
EST: GTTTCATCTGACGAACCCGATGCGACTGCCCAGAAGGTCTGCATTGACCC GCGCACACGCTACGA
genomic: GTTTCATCTGACGACCCCGATGCGACTGCCCAGAAGGTCTGCATTGACCCgtgagtaccc ... tatgaaacagGCGCACACGCTACGA
ggttagacctaatcggacagcatcacttaacactgtcataagtgttatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCCGCCTCCTCCTCCCAGTGCGCCGCATCTCATGTACTGCACCCAGGACATG
acttaac putative branch site (score: 3)
ttatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaccccactctttcagcagactaaaataggttttgcgtttaggttagacctaatcggacagcatcacttaacactgtcataagtgttatgaaacagGCGCACACGCTACGACAAGCTTCCTAGTGTAATCTCAGGTGGCAACAGTCCGCCTCCTCCTCCCAGTGCGCCGCATCTCATGTACTGCACCCAGGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC