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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtactactttacctcaattcttgttatagtcgacgcttgattgtgtgggatactgtatactgtctgacaatgcgatcttttactaatttgagtatcatgctatggtagAGTGTGGGCAGGAACAAACCATGTCCTTGTGGCTCAAAGAAAAAGTACAAGTCTTGCTGTGGCACTTCAAAAAATCGGACTACTCCAGCGTATATGTCCA

Basic information

species Physcomitrella patens
transcript PP1S84_107V6.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67697052|gb|BJ957285.1|BJ957285
EST:     CTGCCAGTGAGAGTGGGAGGATTGGCAATGCGTCGTCCGTGTCTTCTCAG                         AGTGTGGGCAGGAACAAACCATGTCCTTGTGGCTCAAAGAAAAAGTACAAG
genomic: CTGCCAGTGAGAGTGGGAGGATTGGCAATGCGTCGTCCGTGTCTTCTCAGgtgtactact ... gctatggtagAGTGTGGGCAGGAACAAACCATGTCCTTGTGGCTCAAAGAAAAAGTACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatactgtctgacaatgcgatcttttactaatttgagtatcatgctatggtagAGTGTGGGCAGGAACAAACCATGTCCTTGTGGCTCAAAGAAAAAGTACAAGTCTTGCTGTGGCACTTCAAAAAATCGGACTACTCCAGCGTATATGTCCA
                           tactaat  putative branch site (score: 1)
                     atcttttactaattt  TA-rich tract