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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaagatgtagccgacaatgtttcttgtggggtccatttatttcatgtgacttgtgttgttggatgatggatcagggcatccttcgcaattacggcgaagcgagatggatatttttgctttttaagggtgtatgtttttgttttttggagttaaagtgcttacagtgtttgtgtggccgcagAAATTTTGGTAATTTGGATGGTAAGGGATGTGATGATTTTGGAGAGAGACTGCACATGGTGAAAAGTGGTGTGATTTTGGGGAGGCGGAGACGGGGGGTA

Basic information

species Physcomitrella patens
transcript PP1S84_107V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18347010|gb|BJ179056.1|BJ179056
EST:     CTCGAGGCAACCCTAGTGGCATTTGCCGAACTGGGTACTACTCAGACTAT                         AAATTTTGGTAATTTGGATGGTAAGGGATGTGATGATTTTGGAGAGAGACT
genomic: CTCGAGGCAACCCTAGTGGCATTTGCCGAACTGGGTACTACTCAGACTATgtaagtaaga ... gtggccgcagAAATTTTGGTAATTTGGATGGTAAGGGATGTGATGATTTTGGAGAGAGACT
EST: gi|67573666|gb|BJ946490.1|BJ946490
EST:     CTCGAGGCAACCCTAGTGGCATTTGCCGAACTGGGTACTACTCAGACTAT                         AAATTTTGGTAATTTGGATGGTAAGGGATGTGATGATTTTGGAGAGAGACT
genomic: CTCGAGGCAACCCTAGTGGCATTTGCCGAACTGGGTACTACTCAGACTATgtaagtaaga ... gtggccgcagAAATTTTGGTAATTTGGATGGTAAGGGATGTGATGATTTTGGAGAGAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtatgtttttgttttttggagttaaagtgcttacagtgtttgtgtggccgcagAAATTTTGGTAATTTGGATGGTAAGGGATGTGATGATTTTGGAGAGAGACTGCACATGGTGAAAAGTGGTGTGATTTTGGGGAGGCGGAGACGGGGGGTA
                             tgcttac  putative branch site (score: 2)
 tgtttttgtttttt  TA-rich tract