1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...actaggtggtgtttgaagatgccgattaggtcttccacaacactgacatctgtcaatatgcttacgaggctgattatgtttcgttcttggttctgtgcagCCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGAAGAGATAGCATCCCAATATGCCCGTCACCTATCTTCCCCGGATCTCAAG
species | Physcomitrella patens |
transcript | PP1S83_97V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTAATAGCTGCCACCAATCGGAAACAAGACTTGGACCCTGCACTACTTAG CCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAEST: gi|37837070|gb|BJ595078.1|BJ595078
genomic: GTAATAGCTGCCACCAATCGGAAACAAGACTTGGACCCTGCACTACTTAGgtgaagttct ... ttctgtgcagCCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAA
EST: GTAATAGCTGCCACCAATCGGAAACAAGACTTGGACCCTGCACTACTTAG CCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGAEST: gi|162177352|gb|FC352885.1|FC352885
genomic: GTAATAGCTGCCACCAATCGGAAACAAGACTTGGACCCTGCACTACTTAGgtgaagttct ... ttctgtgcagCCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGA
EST: AAACAAGACTTGGACCCTGCACTACTTAG CCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGAEST: gi|162177353|gb|FC352886.1|FC352886
genomic: AAACAAGACTTGGACCCTGCACTACTTAGgtgaagttct ... ttctgtgcagCCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGA
EST: GTAATAGCTGCCACCAATCGGAAACAAGACTTGGACCCTGCACTACTTAG CCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGA
genomic: GTAATAGCTGCCACCAATCGGAAACAAGACTTGGACCCTGCACTACTTAGgtgaagttct ... ttctgtgcagCCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGA
acatctgtcaatatgcttacgaggctgattatgtttcgttcttggttctgtgcagCCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGAAGAGATAGCATCCCAATATGCCCGTCACCTATCTTCCCCGGATCTCAAG
attatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaggtggtgtttgaagatgccgattaggtcttccacaacactgacatctgtcaatatgcttacgaggctgattatgtttcgttcttggttctgtgcagCCGTTTTGATACATCTGTGGCATTCAATTTACCTGATGAAAATACCCGAGAAGAGATAGCATCCCAATATGCCCGTCACCTATCTTCCCCGGATCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA