1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tttttgttggtagatgaggaatatgtcggtttcccgtcttgagattagggttttaaagatgtgtaagcatgaaattgacattttctatgcgctactacagGATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTATTTCAGTTTCATGAAGTTGCTTCACCTTCCAGTAGGTGCGGTGTTCCTTG
species | Physcomitrella patens |
transcript | PP1S83_97V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTTGTGGGTTCTTTTGTAATCCAATTCAG GATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTATEST: gi|18357708|gb|BJ189767.1|BJ189767
genomic: AGTTGTGGGTTCTTTTGTAATCCAATTCAGgtatcatatt ... gctactacagGATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTAT
EST: TGTGCTTGCTAGTGCGTATCAGTTGTGGGTTCTTTTGTAATCCAATTCAG GATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTATEST: gi|100426897|gb|BY977418.1|BY977418
genomic: TGTGCTTGCTAGTGCGTATCAGTTGTGGGTTCTTTTGTAATCCAATTCAGgtatcatatt ... gctactacagGATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTAT
EST: TGTGCTTGCTAGTGCGTATCAGTTGTGGGTTCTTTTGTAATCCAATTCAG GATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTAT
genomic: TGTGCTTGCTAGTGCGTATCAGTTGTGGGTTCTTTTGTAATCCAATTCAGgtatcatatt ... gctactacagGATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTAT
tagggttttaaagatgtgtaagcatgaaattgacattttctatgcgctactacagGATTAACATCAATTTGCTGTAAGAGAGCACGAAGAAGCTTAGGGTTGTTATTTCAGTTTCATGAAGTTGCTTCACCTTCCAGTAGGTGCGGTGTTCCTTG
aattgac putative branch site (score: 3)
ttttaaagat TA-rich tract