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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactcagttgattgcaatctacctctgcgcagtctgttggaaaagtttatcctgcaattatcagtaaccagattattggctgggttggtgaattgcttctttttggccattgttttcctggtagGTTTCGGACGCATGGTAATGAATTATGGGAGTTCGATGAAAACGGTCTCATGCGTAGGCGCGATATGAGCGCTAATGATGTCCCAATACAAGAATCGGAG

Basic information

species Physcomitrella patens
transcript PP1S83_96V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67720156|gb|BJ970415.1|BJ970415
EST:     CACATTGCGGTGCGATTTGAGTACGAGTGGCACAACGAGGCTGGAGAGTG                         GTTTCGGACGCATGGTAATGAATTATGGGAGTTCGATGAAAACGGTCTCAT
genomic: CACATTGCGGTGCGATTTGAGTACGAGTGGCACAACGAGGCTGGAGAGTGgtaagaactc ... ttcctggtagGTTTCGGACGCATGGTAATGAATTATGGGAGTTCGATGAAAACGGTCTCAT
EST: gi|67721696|gb|BJ971955.1|BJ971955
EST:     CACATTGCGGTGCGATTTGAGTACGAGTGGCACAACGAGGCTGGAGAGTG                         GGTTCGGACGCATGGTAATGAATTATGGGAGTTCGATGAAAACGGTCTCAT
genomic: CACATTGCGGTGCGATTTGAGTACGAGTGGCACAACGAGGCTGGAGAGTGgtaagaactc ... ttcctggtagGTTTCGGACGCATGGTAATGAATTATGGGAGTTCGATGAAAACGGTCTCAT
EST: gi|67701669|gb|BJ961902.1|BJ961902
EST:     CACATTGCGGTGCGATTTGAGTACGAGTGGCACAACGAGGCTGGAGAGTG                         GTTTCGGACGCATGGTAATGAATTATGGGAGTT
genomic: CACATTGCGGTGCGATTTGAGTACGAGTGGCACAACGAGGCTGGAGAGTGgtaagaactc ... ttcctggtagGTTTCGGACGCATGGTAATGAATTATGGGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattattggctgggttggtgaattgcttctttttggccattgttttcctggtagGTTTCGGACGCATGGTAATGAATTATGGGAGTTCGATGAAAACGGTCTCATGCGTAGGCGCGATATGAGCGCTAATGATGTCCCAATACAAGAATCGGAG
                                        ttgttttcct  CT-rich tract
                           ttcttttt  TA-rich tract