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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggacgcccccccttgctgttgttcgtcgtttaatttctgtacccattgcaaactagcatacaactacttcggattgaatctcatgctcacatgactttcatccgagtattcatatcaattttttgtataattcttgatggacaactctgttctgcagGTATATTCCAAAATACACCTTTAGTTGGCTTGTCAAGCCAATGTGGCTAGTTATCA

Basic information

species Physcomitrella patens
transcript PP1S83_95V6.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S83_95V6.1 (Physcomitrella patens), 3'ss of exon 6
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 5
gtgagggacgcccccccttgctgttgttcgtcgtttaatttctgtacccattgcaaactagcatacaactacttcggattgaatctcatgctcacatgactttcatccgagtattcatatcaattttttgtataattcttgatggacaactctgttctgcagGTATATTCCAAAATACACCTTTAGTTGGCTTGTCAAGCCAATGTGGCTAGTTATCA
                                            | |   ||| |||   |  ||| | |  ||   |||  ||   |   | ||| |   | |   | |||  |   |   | | ||      |||||||        || |||||||||| ||||| |||| |||||||||||||||| | || || || |||||| |  | || |
--------------------------------------------ttcaacttgtaaat--gtttaccatt--tttcaatttgatgctagaattacaaggtataccaactagtgcttgaacagaatctt------attcttg--------ctttgttctgcagATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgagtattcatatcaattttttgtataattcttgatggacaactctgttctgcagGTATATTCCAAAATACACCTTTAGTTGGCTTGTCAAGCCAATGTGGCTAGTTATCA
                             tcttgat  putative branch site (score: 4)
                                          ctctgttct  putative PPT
     attcatatcaattttt  TA-rich tract