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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGCTGTTCCTATGTCGCTTGCGTTGAGCCCACGCATATACAAGGAGGTGAAGGACTTCAAACCCGATATTATTCATGCATCATCTCCTGGAATAATGgtaagtgttgcttggattctagtgaatgatgtcaatatgacctcgtcttgttcttatatattcattcattagatcttacatatttgagactttgtaaaga...

Basic information

species Physcomitrella patens
transcript PP1S83_95V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S83_95V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ29760 (Selaginella moellendorffii), 5'ss of exon 4
TAAGGCTGTTCCTATGTCGCTTGCGTTGAGCCCACGCATATACAAGGAGGTGAAGGACTTCAAACCCGATATTATTCATGCATCATCTCCTGGAATAATGgta-agtgttgcttggattctagtgaatgatg-tcaatatgacctcgtcttgttcttatatattcattcattagatcttacatatttgagactttgtaaaga
 ||    |||||  ||||||||||  | |||||||||||   |   || ||   | | ||||| |||||||| |||||||| || ||||| ||||||||||||  || ||| ||   |||||     | ||  |  ||                                                                
CAAACTCGTTCCCCTGTCGCTTGCTCTCAGCCCACGCATCATCTCTGAAGTTGCGCATTTCAAGCCCGATATAATTCATGCGTCCTCTCCAGGAATAATGgtatggttttgattttcttctacattttaattcttgatgcag------------------------------------------------------------