1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtgggagcattgtgcttttgaatttcctgttagctttctctcttctgttgtatccaaattgattattcaacggtcaatgctgttccaccgtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGCATGCTCTGCGTCGGTATCCTACCGGTGAAGAACGGTGCATTGCTTGCA
species | Physcomitrella patens |
transcript | PP1S83_83V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGEST: gi|67569163|gb|BJ941987.1|BJ941987
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGNTTCAGAGGGGAGEST: gi|208391815|gb|DC937991.1|DC937991
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGEST: gi|208356711|gb|DC902543.1|DC902543
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGEST: gi|67719791|gb|BJ970050.1|BJ970050
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGEST: gi|208389974|gb|DC938029.1|DC938029
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGEST: gi|100407742|gb|BY955757.1|BY955757
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGEST: gi|100407453|gb|BY991709.1|BY991709
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
EST: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACA ATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
genomic: CCAGAGGCATGGGTTTGGCACTCAAATATTTTTTCGAGAAGAAAGTCACAgtatgatttt ... gtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAG
ctgttgtatccaaattgattattcaacggtcaatgctgttccaccgtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGCATGCTCTGCGTCGGTATCCTACCGGTGAAGAACGGTGCATTGCTTGCA
aattgat putative branch site (score: 10)
aaattgattattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgggagcattgtgcttttgaatttcctgttagctttctctcttctgttgtatccaaattgattattcaacggtcaatgctgttccaccgtgtttgcagATCAATTATCCCTTCGAGAAGGGTCCTTTGAGTCCTCGTTTCAGAGGGGAGCATGCTCTGCGTCGGTATCCTACCGGTGAAGAACGGTGCATTGCTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC