1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTGTGAATCTTAGCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTGgtaattatttgctcacgtcaaacaagaatcatataatcgaacgagtgttatcttttcttctgagattttctagctcaagaatactaaatttaattccagg...
species | Physcomitrella patens |
transcript | PP1S83_77V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTG GTTGAAGTTGGTCCGAACTCATCANAAGAACAGCTTGTGGATGCAGTTTGTEST: gi|67694900|gb|BJ955133.1|BJ955133
genomic: GCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTGgtaattattt ... tgttgtgaagGTTGAAGTTGGTCCGAACTCATCAAAAGAACAGCTTGTGGATGCAGTTTGT
EST: GAAGAGATATCGAAGGCATTTTAAGCTG GTTGAAG-TGGTCCGAACTCATCAAAAGAACAGCTTGTGGATGCAGTTTGTEST: gi|162174824|gb|FC352240.1|FC352240
genomic: GAAGAGATATCGAAGGCATTTTAAGCTGgtaattattt ... tgttgtgaagGTTGAAGTTGGTCCGAACTCATCAAAAGAACAGCTTGTGGATGCAGTTTGT
EST: GCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTG GTTGAAGTTGGTCCGAACTCATCAAAAGAACAGCTTGTGGATGCAGTTTGTEST: gi|162174823|gb|FC352239.1|FC352239
genomic: GCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTGgtaattattt ... tgttgtgaagGTTGAAGTTGGTCCGAACTCATCAAAAGAACAGCTTGTGGATGCAGTTTGT
EST: GCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTG GTTGAAGTTGGTCCGAACTCATCAAAAGAACAGCTTGTGGATGCAGTTTGT
genomic: GCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTGgtaattattt ... tgttgtgaagGTTGAAGTTGGTCCGAACTCATCAAAAGAACAGCTTGTGGATGCAGTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTGAATCTTAGCAAGCTGGAGACGGCTGTTCTGAAGAGATATCGAAGGCATTTTAAGCTGgtaattatttgctcacgtcaaacaagaatcatataatcgaacgagtgttatcttttcttctgagattttctagctcaagaatactaaatttaattccagg
- - - - - - - CAAGCT
- - - - - - - AAGCTG
- - - - - - - - GCTGGA
- - - - - - - - - TGGAGA
- - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaagaa