1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatcttgattgattgttgagcactgctgtgcaattcaccgcaactgtttgcgaggttcgataaatgttttaattgattcatgtatgagttacccctgcagGAGAATAGGGCTGGTGTTTGGAGAATAGTAGAAGCATTACAAAGGCCGTAACATTTGGTTCAAGTGAATGGTAGTGATGGGGTACGCAGAAGAGGGCCTT
species | Physcomitrella patens |
transcript | PP1S83_77V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTAATCCACCAAG GAGAATAGGGCTGGTGTTTGGAGAATAGTAGAAGCATTACAAAGGCCGTAAEST: gi|100384179|gb|BY950565.1|BY950565
genomic: GTTTAATCCACCAAGgtagcagcca ... acccctgcagGAGAATAGGGCTGGTGTTTGGAGAATAGTAGAAGCATTACAAAGGCCGTAA
EST: CGAGTTGATTCATGGTTGCGTTTGCAGTATCCTGAGTTTAATCCACCAAG GAGAATAGGGCTGGTGTTTGGAGAATAGTAGAAGCATTACAAAGGCCGTAA
genomic: CGAGTTGATTCATGGTTGCGTTTGCAGTATCCTGAGTTTAATCCACCAAGgtagcagcca ... acccctgcagGAGAATAGGGCTGGTGTTTGGAGAATAGTAGAAGCATTACAAAGGCCGTAA
gtttgcgaggttcgataaatgttttaattgattcatgtatgagttacccctgcagGAGAATAGGGCTGGTGTTTGGAGAATAGTAGAAGCATTACAAAGGCCGTAACATTTGGTTCAAGTGAATGGTAGTGATGGGGTACGCAGAAGAGGGCCTT
ttacccct CT-rich tract
ataaatgttttaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcttgattgattgttgagcactgctgtgcaattcaccgcaactgtttgcgaggttcgataaatgttttaattgattcatgtatgagttacccctgcagGAGAATAGGGCTGGTGTTTGGAGAATAGTAGAAGCATTACAAAGGCCGTAACATTTGGTTCAAGTGAATGGTAGTGATGGGGTACGCAGAAGAGGGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG