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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaatctagcctaaatctctccccactcttttctttcctctccgtcttctcgctcagaataacgaccctcttctgttttttgtttctttcatacaaaatttcatataagttttggtttcggggttctttaaatggcagTGTACCAGGTACTCAAAGGAATTATTAAGAAGAGATATGGGCAAGATGCATGCAATGTGGGTGACGAGGGTGGCTTTGCACCCAACATCCAAGACAACCG

Basic information

species Physcomitrella patens
transcript PP1S83_55V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S83_55V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os09g20820.1 (Oryza sativa), 3'ss of exon 2
gtattcaatctagcctaaatctctccccactcttttctttcctctccgtcttctcgctcagaataacgaccctcttctgttttttgtttctttcatacaaaatttcatataagttttggtttcggggttctttaaatggcagTGTACCAGGTACTCAAAGGAATTATTAAGAAGAGATATGGGCAAGATGCATGCAATGTGGGTGACGAGGGTGGCTTTGCACCCAACATCCAAGACAACCG
                               | ||     |   | | ||| | |  |  || |         ||   || ||||  ||||   ||       |||   | || |||   |         |  |  |  |||| ||||| |  || || || || ||||||  || |||||| ||||||||||||||||| || || || ||||||||||| || ||  | ||||||||| |
------------------------------acattggcaacagttacatctgcgcattt-gacttgtagtttgctctcgtcttttaattctcaaatgtttgtcttc---tgagatttacctg--------tccatgttacagTTTACCATGCCCTAAAGGGCATCATTAAGGCGAAATATGGTCAAGATGCATGCAATGTTGGAGATGAAGGTGGCTTTGCTCCTAATGTTCAAGACAACAG

upper sequence: PP1S83_55V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ26490 (Selaginella moellendorffii), 3'ss of exon 3
gtattcaatctagcctaaatctctccccactcttttctttcctctccgtcttctcgctcagaataacgaccctcttctgttttttgtttctttcatacaaaatttcatataagttttggtttcggggttctttaaatggcagTGTACCAGGTACTCAAAGGAATTATTAAGAAGAGATATGGGCAAGATGCATGCAATGTGGGTGACGAGGGTGGCTTTGCACCCAACATCCAAGACAACCG
                                                                          |||  || || |||||| |        |||| | |  |  ||| ||||    ||  ||       |||| |||||||| || || ||||| || ||||| |  || || ||||| ||||||||||| ||||||||||| || || || || ||||| ||||||||| |
-------------------------------------------------------------------------gttcgtttcttcgtttctcttg------attttacaggaacttttgttt----gtgttt-------cagTTTACCAGGTTCTGAAGGGAATCATAAAGAAAAAGTACGGCCAAGACGCATGCAATGTTGGTGACGAGGGAGGTTTCGCTCCAAACATTCAAGACAACAG

upper sequence: PP1S83_55V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ26799 (Selaginella moellendorffii), 3'ss of exon 2
gtattcaatctagcctaaatctctccccactcttttctttcctctccgtcttctcgctcagaataacgaccctcttctgttttttgtttctttcatacaaaatttcatataagttttggtttcggggttctttaaatggcagTGTACCAGGTACTCAAAGGAATTATTAAGAAGAGATATGGGCAAGATGCATGCAATGTGGGTGACGAGGGTGGCTTTGCACCCAACATCCAAGACAACCG
                                                                          |||  || || |||||| |        |||| | |     ||| ||||    ||  ||       |||| ||||| || || || ||||| || ||||| |  || || ||||| ||||||||||| ||||||||||| || || || || ||||| ||||||||| |
-------------------------------------------------------------------------gttcgtttcttcgtttctcttg------attttacagggacttttgttt----gtgttt-------cagTTTACCACGTTCTGAAGGGAATCATAAAGAAAAAGTACGGCCAAGACGCATGCAATGTTGGTGACGAGGGAGGTTTCGCTCCAAACATTCAAGACAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttcatacaaaatttcatataagttttggtttcggggttctttaaatggcagTGTACCAGGTACTCAAAGGAATTATTAAGAAGAGATATGGGCAAGATGCATGCAATGTGGGTGACGAGGGTGGCTTTGCACCCAACATCCAAGACAACCG
                                        ttcttt  CT-rich tract
       atacaaaatttcatat  TA-rich tract