Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67693377|gb|BJ953610.1|BJ953610EST: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAG TTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
genomic: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAGgtaacaaaaa ... tttcgggcagTTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
EST:
gi|162241802|gb|FC418057.1|FC418057EST: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAG TTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
genomic: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAGgtaacaaaaa ... tttcgggcagTTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
EST:
gi|7584271|gb|AW700167.1|AW700167EST: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAG TTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
genomic: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAGgtaacaaaaa ... tttcgggcagTTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
EST:
gi|67699202|gb|BJ959435.1|BJ959435EST: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAG TTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
genomic: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAGgtaacaaaaa ... tttcgggcagTTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
EST:
gi|162241801|gb|FC418056.1|FC418056EST: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAG TTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
genomic: CGTTGTGGATGGTATTTCATCGAGATTTTCTAAAAAGGATCATCATTGAGgtaacaaaaa ... tttcgggcagTTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaatatctcctcaggggtacttaattctactacctattttgctttttcgggcagTTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGGCCGTCTTTCATGGAGATTGCATATTCCGAAATGGAGGAAATTGAAAGAG
acttaat putative branch site (score: 4)
cctattttgctttttc putative PPT
tacttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacaaaaaaattaatggtccttcacatactttctacattcagcataactttcttcgagtctcagttgataatgattcacgtcgtgatttgaacctggataggttggtgaaaatttgcggagtaattcctaacaaaatatctcctcaggggtacttaattctactacctattttgctttttcgggcagTTGTGCGAGTTGCAGACGACTTGAAGCTGAAAAATTTGCAAACTTGGTTGGCCGTCTTTCATGGAGATTGCATATTCCGAAATGGAGGAAATTGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA