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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGCAACCAAAACCCCAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAGgttaatacttcaccttgatctacagctctttttctgtcgattagtcgtttgcattaacttctcttgctttgagggttaataagatgacgatatctaatac...

Basic information

species Physcomitrella patens
transcript PP1S83_28V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162264424|gb|FC440590.1|FC440590
EST:     CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAG                         ACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
genomic: CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAGgttaatactt ... gggtgtgcagACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
EST: gi|18338935|gb|BJ170961.1|BJ170961
EST:     CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAG                         ACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
genomic: CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAGgttaatactt ... gggtgtgcagACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
EST: gi|18333942|gb|BJ165958.1|BJ165958
EST:     CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAG                         ACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
genomic: CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAGgttaatactt ... gggtgtgcagACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
EST: gi|162173421|gb|FC349800.1|FC349800
EST:     CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAG                         ACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
genomic: CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAGgttaatactt ... gggtgtgcagACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
EST: gi|37843731|gb|BJ601739.1|BJ601739
EST:     CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAG                         ACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT
genomic: CAAGTGAAGTGTTTGAATCGATTAAACCACTCTTCAAGCATTTCAAGCAGgttaatactt ... gggtgtgcagACGGATTCAGAGATTCAAGTTGAGCTAGTTGAAGCAATCAAAAACCACAGT