1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGCATTACTGGCATTGTTGTCACATTAGCCACTATGTTTCCAACCTGGGTTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAGgtatgttctctgctcattgctaagatggaaacttgaataagaatgactagaagcttttcaaagtcgcttcattgcatacccataacgtcttcaggtagtgaacctttgattggcttcttgattttttatctcttcctttgtgcag
species | Physcomitrella patens |
transcript | PP1S83_26V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAG ANNNNNNNNGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAGEST: gi|208375377|gb|DC945048.1|DC945048
genomic: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAGgtatgttctc ... ctttgtgcagATTTTTTTTGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAG
EST: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAG ANNNNNNNNGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAGEST: gi|162198110|gb|FC372553.1|FC372553
genomic: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAGgtatgttctc ... ctttgtgcagATTTTTTTTGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAG
EST: GGAGAGGGTATTGCCAACATTCTCATGCAG ANNNNNNNNGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAGEST: gi|208385699|gb|DC952860.1|DC952860
genomic: GGAGAGGGTATTGCCAACATTCTCATGCAGgtatgttctc ... ctttgtgcagATTTTTTTTGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAG
EST: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAG ANNNNNNNNGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAGEST: gi|162198111|gb|FC372554.1|FC372554
genomic: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAGgtatgttctc ... ctttgtgcagATTTTTTTTGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAG
EST: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAG ANNNNNNNNGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAG
genomic: TTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAGgtatgttctc ... ctttgtgcagATTTTTTTTGCCACTGTGGGTGCCAATGGCAGTGTGCGAAACGTGATCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCATTACTGGCATTGTTGTCACATTAGCCACTATGTTTCCAACCTGGGTTGGCTCTCTTGCTCCTTCTGGAGAGGGTATTGCCAACATTCTCATGCAGgtatgttctctgctcattgctaagatggaaacttgaataagaatgactagaagcttttcaaagtcgcttcattgcatacccataacgtcttcaggtagtgaacctttgattggcttcttgattttttatctcttcctttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG