1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAGCTGGTCTGGCAGCAGATAATCTTATATGCGCAGTCTACTTCACCACTCTGTTCGCCTTGGCATCAAAAATTCCTCCTGAACAAGCATCAACTTCAGgtatgtattcatgttaaaaccaatctttatacatttcaggactatctccgtcaaagatagctacatcaaacttcatcaagcagaacaacatggttaggtg...
species | Physcomitrella patens |
transcript | PP1S83_26V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATCAAAAATTCCTCCTGAACAAGCATCAACTTCAG GAAAAGTCGAGGGGTTTGTGGAAGGGAGAGGCCAAGTGCAAGTGCTAGAAGEST: gi|162198111|gb|FC372554.1|FC372554
genomic: GCATCAAAAATTCCTCCTGAACAAGCATCAACTTCAGgtatgtattc ... gatcgttcagGAAAAGTCGAGGGGTTTGTGGAAGGGAGAGGCCAAGTGCAAGTGCTAGAAG
EST: TCTGTTCGCCTTGGCATCAAAAATTCCTCCTGAACAAGCATCAACTTCAG GAAAAGTCGAGGGGTTTGTGGAAGGGAGAGGCCAAGTGCAAGTGCTAGAAG
genomic: TCTGTTCGCCTTGGCATCAAAAATTCCTCCTGAACAAGCATCAACTTCAGgtatgtattc ... gatcgttcagGAAAAGTCGAGGGGTTTGTGGAAGGGAGAGGCCAAGTGCAAGTGCTAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCTGGTCTGGCAGCAGATAATCTTATATGCGCAGTCTACTTCACCACTCTGTTCGCCTTGGCATCAAAAATTCCTCCTGAACAAGCATCAACTTCAGgtatgtattcatgttaaaaccaatctttatacatttcaggactatctccgtcaaagatagctacatcaaacttcatcaagcagaacaacatggttaggtg
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