1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattgaaaatcttagtttttgtaagctttgtgtggtagaatttcaggattatttaaagcttgccaagttattgcagattctagtattgtaacgttgagatattttggagtcgtaatttcggtttgagatcctggtgtattttaacgaaattctggagcttaagttcactttcccttgtttgttttggtaaatcag
species | Physcomitrella patens |
transcript | PP1S83_251V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG GATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCTEST: gi|67717787|gb|BJ968046.1|BJ968046
genomic: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattga ... ggtaaatcagGATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCT
EST: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG GATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCTEST: gi|18356642|gb|BJ188701.1|BJ188701
genomic: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattga ... ggtaaatcagGATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCT
EST: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG GATGGGTCAACGTACACGCTTCGTT
genomic: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattga ... ggtaaatcagGATGGGTCAACGTACACGCTTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattgaaaatcttagtttttgtaagctttgtgtggtagaatttcaggattatttaaagcttgccaagttattgcagattctagtattgtaacgttgagatattttggagtcgtaatttcggtttgagatcctggtgtattttaacgaaattctggagcttaagttcactttcccttgtttgttttggtaaatcag
- - - - - - - AAGGAG