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TGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTTgtatcctccctttgactctagatatctccaagtagataatgtctggaatgccattttaagttcattagatttttagtacgtcataagcatgtagttgtgg...
species | Physcomitrella patens |
transcript | PP1S83_251V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GCGCTCGGAGTGCTACATGCTGGACGTGGAATA-TCATTTTTATGACTTT ACGGAATGGATTGGAAAGGAGTTTCAATACACCEST: gi|208357963|gb|DC938834.1|DC938834
genomic: GCGCTCGGAGTGCTACATGCTGGACGTGGA-TAATCATTTTTATGACTTTgtatcctccc ... gcgactacagACGGATTGGATTGGAAAGGAGTTTCAATACACC
EST: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTT ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGEST: gi|18354741|gb|BJ186799.1|BJ186799
genomic: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTTgtatcctccc ... gcgactacagACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG
EST: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTT ACGGATTGGATTGGAAAGGAGTTTEST: gi|67717787|gb|BJ968046.1|BJ968046
genomic: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTTgtatcctccc ... gcgactacagACGGATTGGATTGGAAAGGAGTTT
EST: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTT ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGEST: gi|18356642|gb|BJ188701.1|BJ188701
genomic: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTTgtatcctccc ... gcgactacagACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG
EST: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTT ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG
genomic: CGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTTgtatcctccc ... gcgactacagACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTGTATTTTCATTTGCCTGTCATGCGACGTTATCTCTAAGCCCGCGCTCGGAGTGCTACATGCTGGACGTGGATAATCATTTTTATGACTTTgtatcctccctttgactctagatatctccaagtagataatgtctggaatgccattttaagttcattagatttttagtacgtcataagcatgtagttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA