Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatctcattccccaactacataatacaatttccacgtttagctttagaatcttgagtggtatttacatatgttctgaatttggttttgaatctagcaactgatcagtgtgtaacctgctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGCTGGGGACGGCTCTCCTGCTGGAGGAGGTACATGACACAGAGGAAAGGTT

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.9
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354636|gb|DC918690.1|DC918690
EST:     GCCAAATGATCCTAACAGCGTTA-TTTTAGTGAGCCCATGNTTTACGTTA                         ACCCCAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162198661|gb|FC373455.1|FC373455
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208367002|gb|DC947764.1|DC947764
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162228234|gb|FC404950.1|FC404950
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|37835668|gb|BJ593680.1|BJ593680
EST:     GCCAAATGATCNTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162245635|gb|FC423318.1|FC423318
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162154039|gb|FC330274.1|FC330274
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|67694439|gb|BJ954672.1|BJ954672
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162209828|gb|FC385970.1|FC385970
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162179592|gb|FC355234.1|FC355234
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|37839903|gb|BJ597911.1|BJ597911
EST:     GCCAAATGATCNTANCAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATNTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|18338874|gb|BJ170900.1|BJ170900
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162170834|gb|FC347448.1|FC347448
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162192158|gb|FC368307.1|FC368307
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162154038|gb|FC330273.1|FC330273
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTNTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|37833923|gb|BJ591935.1|BJ591935
EST:     GCCAAATGATCNTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162211310|gb|FC387540.1|FC387540
EST:     AGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: AGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208395989|gb|DC915749.1|DC915749
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|18335371|gb|BJ167390.1|BJ167390
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162175972|gb|FC352378.1|FC352378
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162172926|gb|FC348931.1|FC348931
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208379631|gb|DC927128.1|DC927128
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208387218|gb|DC945517.1|DC945517
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162202407|gb|FC379194.1|FC379194
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162179591|gb|FC355233.1|FC355233
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTNTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162222136|gb|FC397364.1|FC397364
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162210249|gb|FC386734.1|FC386734
EST:     TTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: TTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162196272|gb|FC374354.1|FC374354
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162279646|gb|FC455892.1|FC455892
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208382425|gb|DC927959.1|DC927959
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|37833729|gb|BJ591741.1|BJ591741
EST:     GCCAAATGATCNTANCAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAANCCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208385455|gb|DC956653.1|DC956653
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162149977|gb|FC326508.1|FC326508
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162152925|gb|FC329227.1|FC329227
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162170833|gb|FC347447.1|FC347447
EST:     TAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: TAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162198704|gb|FC374824.1|FC374824
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTT-                         ACCCAAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATG
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCC-AAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATG
EST: gi|15729088|gb|BI741131.1|BI741131
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCTTATAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162188509|gb|FC365107.1|FC365107
EST:     AGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: AGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162219803|gb|FC396215.1|FC396215
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162160009|gb|FC335671.1|FC335671
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162175971|gb|FC352377.1|FC352377
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162209829|gb|FC385971.1|FC385971
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208384149|gb|DC919663.1|DC919663
EST:     GCCAAATGATCCTAACAGCGTTACTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|37827216|gb|BJ585228.1|BJ585228
EST:     GCCAAATGATCNTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|67692666|gb|BJ952899.1|BJ952899
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208375875|gb|DC926967.1|DC926967
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208378525|gb|DC927222.1|DC927222
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|208360484|gb|DC950058.1|DC950058
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|162245636|gb|FC423319.1|FC423319
EST:     GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         ACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
EST: gi|37825532|gb|BJ583598.1|BJ583598
EST:     GCCAAATGATCNTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTA                         NCCCAAACCAGAGAATTTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC
genomic: GCCAAATGATCCTAACAGCGTTATTTTTAGTGAGCCCATGTTTTACGTTAgtaagtatct ... ctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaatttggttttgaatctagcaactgatcagtgtgtaacctgctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGCTGGGGACGGCTCTCCTGCTGGAGGAGGTACATGACACAGAGGAAAGGTT
                                           tgctgat  putative branch site (score: 3)
           ttttgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatctcattccccaactacataatacaatttccacgtttagctttagaatcttgagtggtatttacatatgttctgaatttggttttgaatctagcaactgatcagtgtgtaacctgctgataacagACCCAAACCAGAGAATCTCAGTTCCTGTGGGCTACGACAGCGAAGGAATGCTGGGGACGGCTCTCCTGCTGGAGGAGGTACATGACACAGAGGAAAGGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA