1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtgattcagctcactctccctgctcttctgattgtggtgcctctttcttttcgaaaattgtcttcatttggcgatgctgtatcttatttcagttgacactgttttgggtgtgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTACGGACCTTGGCACTTCAATATCGAGGAGCACCTTCTAAATGATGGAATA
species | Physcomitrella patens |
transcript | PP1S77_67V6.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|100383766|gb|BY969295.1|BY969295
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162154039|gb|FC330274.1|FC330274
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162149978|gb|FC326509.1|FC326509
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162218807|gb|FC394350.1|FC394350
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162179592|gb|FC355234.1|FC355234
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|100422641|gb|BY976475.1|BY976475
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162170834|gb|FC347448.1|FC347448
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|208348492|gb|DC913206.1|DC913206
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|67569405|gb|BJ942229.1|BJ942229
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162175972|gb|FC352378.1|FC352378
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162172926|gb|FC348931.1|FC348931
genomic: GTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162188510|gb|FC365108.1|FC365108
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|208379631|gb|DC927128.1|DC927128
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: TCGTTCCCTGCAAAAGGTTGANCCCAGAACGTTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|100398476|gb|BY972627.1|BY972627
genomic: TCGTTCCCTGCAAAAGGTTGA-CCCAGAACG-TTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162154996|gb|FC331414.1|FC331414
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|22491898|gb|BU051821.1|BU051821
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162196272|gb|FC374354.1|FC374354
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|208382425|gb|DC927959.1|DC927959
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: TTCGTTCCCTGCAAAAGGNTTGACCCAGAACG-TTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162211311|gb|FC387541.1|FC387541
genomic: TTCGTTCCCTGCAAAAGG-TTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|208385455|gb|DC956653.1|DC956653
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: TATTACCAANG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162222137|gb|FC397365.1|FC397365
genomic: TATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162202569|gb|FC380058.1|FC380058
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162160009|gb|FC335671.1|FC335671
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162198662|gb|FC373456.1|FC373456
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162209829|gb|FC385971.1|FC385971
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|208375875|gb|DC926967.1|DC926967
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|208378525|gb|DC927222.1|DC927222
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATNACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATNGGCGTAEST: gi|162245636|gb|FC423319.1|FC423319
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: CCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|100416171|gb|BY957111.1|BY957111
genomic: CCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|162228235|gb|FC404951.1|FC404951
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTAEST: gi|100397597|gb|BY990306.1|BY990306
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG AAACCAATGGTATGATGCGAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
atttggcgatgctgtatcttatttcagttgacactgttttgggtgtgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTACGGACCTTGGCACTTCAATATCGAGGAGCACCTTCTAAATGATGGAATA
agttgac putative branch site (score: 4)
tatcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgattcagctcactctccctgctcttctgattgtggtgcctctttcttttcgaaaattgtcttcatttggcgatgctgtatcttatttcagttgacactgttttgggtgtgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTACGGACCTTGGCACTTCAATATCGAGGAGCACCTTCTAAATGATGGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA