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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttatactctccgctttggttggaaaaaaatgaagatgagagtcgagcactttttcgtggtgtagagtagctgtcattctctgtgggtgccgaaac...

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.5
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279647|gb|FC455893.1|FC455893
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100383766|gb|BY969295.1|BY969295
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162218807|gb|FC394350.1|FC394350
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100422641|gb|BY976475.1|BY976475
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208348492|gb|DC913206.1|DC913206
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|67569405|gb|BJ942229.1|BJ942229
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162188510|gb|FC365108.1|FC365108
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100398476|gb|BY972627.1|BY972627
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGCAG                       
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA--AGgtacgttata ... tatctagc
EST: gi|162154996|gb|FC331414.1|FC331414
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|22491898|gb|BU051821.1|BU051821
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162211311|gb|FC387541.1|FC387541
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162222137|gb|FC397365.1|FC397365
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162202569|gb|FC380058.1|FC380058
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162198662|gb|FC373456.1|FC373456
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162209829|gb|FC385971.1|FC385971
EST:     GATGGCAAGTTCAAAG                         GTGTTTGACTCGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: GATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100416171|gb|BY957111.1|BY957111
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162228235|gb|FC404951.1|FC404951
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|18332077|gb|BJ164089.1|BJ164089
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100397597|gb|BY990306.1|BY990306
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttatactctccgctttggttggaaaaaaatgaagatgagagtcgagcactttttcgtggtgtagagtagctgtcattctctgtgggtgccgaaac

- - - - - - - - - - - - - - - - GCAAAG