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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatacctgtttacagattgaatcataggttgtgatgttcatgtgcatattagaactcgagcataagttgttaaatgagtttactgggattttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCT

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162219804|gb|FC396216.1|FC396216
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208389722|gb|DC933624.1|DC933624
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208348492|gb|DC913206.1|DC913206
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18331833|gb|BJ163845.1|BJ163845
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162202569|gb|FC380058.1|FC380058
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162188510|gb|FC365108.1|FC365108
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162198662|gb|FC373456.1|FC373456
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100429290|gb|BY978036.1|BY978036
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162211311|gb|FC387541.1|FC387541
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162208267|gb|FC384371.1|FC384371
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100429105|gb|BY977942.1|BY977942
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100379454|gb|BY986645.1|BY986645
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|67576818|gb|BJ949642.1|BJ949642
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|208351671|gb|DC905778.1|DC905778
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|67572807|gb|BJ945631.1|BJ945631
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|67569405|gb|BJ942229.1|BJ942229
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162170772|gb|FC347386.1|FC347386
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162279647|gb|FC455893.1|FC455893
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162209829|gb|FC385971.1|FC385971
EST:     GATGGCAAGTTC-AA-                         -AGGTGTTTGACTCGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: GATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100425505|gb|BY958629.1|BY958629
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGGCCCGACAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATG-CCCGACAG
EST: gi|18332077|gb|BJ164089.1|BJ164089
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162222137|gb|FC397365.1|FC397365
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162210263|gb|FC386735.1|FC386735
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162152926|gb|FC329228.1|FC329228
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162228235|gb|FC404951.1|FC404951
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100386144|gb|BY970083.1|BY970083
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100397597|gb|BY990306.1|BY990306
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18346422|gb|BJ178465.1|BJ178465
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100398476|gb|BY972627.1|BY972627
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         CAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18327599|gb|BJ159602.1|BJ159602
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162218807|gb|FC394350.1|FC394350
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|67570902|gb|BJ943726.1|BJ943726
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|22491898|gb|BU051821.1|BU051821
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|162154996|gb|FC331414.1|FC331414
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100422641|gb|BY976475.1|BY976475
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|100383766|gb|BY969295.1|BY969295
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA-                         -AGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
EST: gi|18348189|gb|BJ180236.1|BJ180236
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         --G-TGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... ttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattagaactcgagcataagttgttaaatgagtttactgggattttgtatctagCAGGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCT
                ataagttgttaaat  TA-rich tract