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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacgtaatagattttcaatctattgacaggaaaactgactattatctggaatgtcttctgttgtatttaatttgttgttcccttgatttctttttaacagGGCAGTTTCCAATCTCCGTGTGTTGGAAATTACAGGCTGGTCTGGGATAATACTTATTCTAACTTTTATCGCAAG

Basic information

species Physcomitrella patens
transcript PP1S77_45V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37844168|gb|BJ602176.1|BJ602176
EST:     CTAGAGCAACAAGGCCCATGTTTCCATATCAAAGATATGAAACTCATCAG                         GGCAGTTTCCAATCTCCGTGTGTTGGAAATTACAGGCTGGTCTGGGATAAT
genomic: CTAGAGCAACAAGGCCCATGTTTCCATATCAAAGATATGAAACTCATCAGgtatttgttt ... tttttaacagGGCAGTTTCCAATCTCCGTGTGTTGGAAATTACAGGCTGGTCTGGGATAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggaatgtcttctgttgtatttaatttgttgttcccttgatttctttttaacagGGCAGTTTCCAATCTCCGTGTGTTGGAAATTACAGGCTGGTCTGGGATAATACTTATTCTAACTTTTATCGCAAG
                             ttgttcccttgatttc  CT-rich tract
               ttgtatttaatttgtt  TA-rich tract