1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...actacggagtcaatctcagtgatgtatccgcgcagtggcgtgtgctgaacgtgtatgtgaggagcaactatttaatcgattaggaaattggtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCGATGAAAATTTGTGGAAAAACCGAGAGATGATTGAAGAAATGCTTCATCT
species | Physcomitrella patens |
transcript | PP1S77_45V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTG ATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCGEST: gi|18374991|gb|BJ206569.1|BJ206569
genomic: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTGgtaggtcttc ... gtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCG
EST: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTG ATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCGEST: gi|18346398|gb|BJ178441.1|BJ178441
genomic: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTGgtaggtcttc ... gtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCG
EST: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTG ATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCGEST: gi|18373672|gb|BJ205250.1|BJ205250
genomic: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTGgtaggtcttc ... gtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCG
EST: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTG ATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCGEST: gi|100430541|gb|BY959921.1|BY959921
genomic: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTGgtaggtcttc ... gtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCG
EST: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTG ATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCG
genomic: GCTTCGGGAGCACGTCCACAAAGCGCAAACTGTTAGTCCCGGCTCTCGTGgtaggtcttc ... gtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCG
tgaacgtgtatgtgaggagcaactatttaatcgattaggaaattggtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCGATGAAAATTTGTGGAAAAACCGAGAGATGATTGAAGAAATGCTTCATCT
atttaat putative branch site (score: 4)
tttttac putative PPT
tatttaatcgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actacggagtcaatctcagtgatgtatccgcgcagtggcgtgtgctgaacgtgtatgtgaggagcaactatttaatcgattaggaaattggtttttacagATAATGGCGCTCTGATTGGGCAATTCAACAACCCAGCTCCTCACAAACTCGATGAAAATTTGTGGAAAAACCGAGAGATGATTGAAGAAATGCTTCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - tgctgaa