1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaacacaaattgctggtttttcgtttcgtttttctcttaacctatttctcgtgatatttgccactacttgagctctcctactctcatttaccttacctggttcaaaataacagaaagttggaaccatgaggttgactgtgcctgatgtttctgagctgaatttcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCACGGTTGGCACACAAATTACTCTTCGACGGCAAGGATGTAGATCTCAAC
species | Physcomitrella patens |
transcript | PP1S77_324V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAG GTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCEST: gi|162257215|gb|FC433091.1|FC433091
genomic: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAGgtaacacaaa ... tcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACC
EST: AAGGGATTTTCTGTATGGAGCGNGAACGATGACCAGTTCCACGATGCTAG GTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGGCA-TTTGATAC
genomic: AAGGGATTTTCTGTATGGAGCGGGAACGATGACCAGTTCCACGATGCTAGgtaacacaaa ... tcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAG-CAATTTGATAC
ttggaaccatgaggttgactgtgcctgatgtttctgagctgaatttcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCACGGTTGGCACACAAATTACTCTTCGACGGCAAGGATGTAGATCTCAAC
gcctgat putative branch site (score: 12)
tttcatttcc putative PPT
aatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacaaattgctggtttttcgtttcgtttttctcttaacctatttctcgtgatatttgccactacttgagctctcctactctcatttaccttacctggttcaaaataacagaaagttggaaccatgaggttgactgtgcctgatgtttctgagctgaatttcatttccagGTGGAATTATGGAGCACAAGGGGTTATCTCGGTAGTGAGCAATTTGATACCACGGTTGGCACACAAATTACTCTTCGACGGCAAGGATGTAGATCTCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG