1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgctgtcttggtcctgctgagtattaagactcagctagacgtgacgttaaattcttctcagattttgaataaatctcgttttcctctcccaatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGACTCCTTACTTGCCAGATGGACGCTTCGATCTGGAAGCTTTCGATTCGCTC
species | Physcomitrella patens |
transcript | PP1S77_324V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGCAGGCACCAGCGATCCCCATGCGTAGCCGTAAGATGATGAAGCTGAG CACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGACEST: gi|100398053|gb|BY954064.1|BY954064
genomic: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAGgtactttttc ... caatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGAC
EST: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAG CACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGACEST: gi|100433052|gb|BY978787.1|BY978787
genomic: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAGgtactttttc ... caatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGAC
EST: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAG CACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGACEST: gi|162257215|gb|FC433091.1|FC433091
genomic: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAGgtactttttc ... caatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGAC
EST: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAG CACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGACEST: gi|100388221|gb|BY951823.1|BY951823
genomic: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAGgtactttttc ... caatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGAC
EST: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAG CACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGAC
genomic: ATGCAGGCACCAGCGATCCCCATGCGTAGTCGTAAGATGATGAAGCTGAGgtactttttc ... caatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGAC
cgttaaattcttctcagattttgaataaatctcgttttcctctcccaatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGACTCCTTACTTGCCAGATGGACGCTTCGATCTGGAAGCTTTCGATTCGCTC
tctcgttttcctctcc CT-rich tract
agattttgaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgtcttggtcctgctgagtattaagactcagctagacgtgacgttaaattcttctcagattttgaataaatctcgttttcctctcccaatgtgcagCACTACGGTGGACGAATTGAAGAATTTGAGGTTGATAACTGCTATCAAGACTCCTTACTTGCCAGATGGACGCTTCGATCTGGAAGCTTTCGATTCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG