Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100380078|gb|BY968835.1|BY968835EST: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAG GTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
genomic: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAGgtcagtgatt ... gttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
EST:
gi|162228777|gb|FC405805.1|FC405805EST: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAG GTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
genomic: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAGgtcagtgatt ... gttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
EST:
gi|100410824|gb|BY956205.1|BY956205EST: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAG GTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
genomic: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAGgtcagtgatt ... gttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACGGCTTGTTGATGTATAAACAGATGTTGAAAGCGAAGTTTGTGCCGGATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAGgtcagtgattgttgttgagttccatatcggttttttctgcgctgcgtctctagttaattaatcactccattgttccttgcaatgtatgctatgattgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT