Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgctgtttccaaccctacacgtcatctttggtttcatcttaagtttatgtttgtactcgtatagaatcataacccactggttctgtctgtgttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCGCCCGATGTTTACACTTACACCATCCTTATTCGCAGTCTGGGTACCATAG

Basic information

species Physcomitrella patens
transcript PP1S77_321V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100380078|gb|BY968835.1|BY968835
EST:     ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAG                         GTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
genomic: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAGgtcagtgatt ... gttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
EST: gi|162228777|gb|FC405805.1|FC405805
EST:     ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAG                         GTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
genomic: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAGgtcagtgatt ... gttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
EST: gi|100410824|gb|BY956205.1|BY956205
EST:     ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAG                         GTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG
genomic: ATCACACCACCTTCAACATTCTCATTGACAGCTTGGCAAAGGCTGATCAGgtcagtgatt ... gttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtttgtactcgtatagaatcataacccactggttctgtctgtgttgcggcagGTTGAGGAAGCTTGCAATGTCTTTGGTGACATGTTCAAACTCAATGTCTCGCCCGATGTTTACACTTACACCATCCTTATTCGCAGTCTGGGTACCATAG
                     tcataac  putative branch site (score: 2)
              tatagaat  TA-rich tract