1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTCTTCACCTTGCTGCTGCTGGTGGGCATATTGATGTGATGGATGAGCTTTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgctctttctcagagctcttgcgtctaaataaagtgtctggaaaatgtcgtctggtgctaactagtataaataaactcacttgtattctacac...
species | Physcomitrella patens |
transcript | PP1S77_25V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGAT GGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTTEST: gi|37835619|gb|BJ593631.1|BJ593631
genomic: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgc ... ttatctgcagGGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
EST: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGAT GGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTTEST: gi|162167138|gb|FC343614.1|FC343614
genomic: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgc ... ttatctgcagGGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
EST: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGAT GGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTTEST: gi|37828694|gb|BJ586706.1|BJ586706
genomic: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgc ... ttatctgcagGGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
EST: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGAT GGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTTEST: gi|37831487|gb|BJ589499.1|BJ589499
genomic: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgc ... ttatctgcagGGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
EST: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGAT GGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTTEST: gi|162154471|gb|FC330473.1|FC330473
genomic: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgc ... ttatctgcagGGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
EST: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGAT GGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTTEST: gi|162159379|gb|FC335167.1|FC335167
genomic: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgc ... ttatctgcagGGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
EST: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGAT GGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
genomic: TTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgc ... ttatctgcagGGACTCCTCTTCACAACGCTGCCAAAGAGAGAAATAGAAAAGCAGTTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTTCACCTTGCTGCTGCTGGTGGGCATATTGATGTGATGGATGAGCTTTTGGAGCGTGGTGCGGATATTGATGTTCGTACGAAAGGTGGTTGTGGATgtgagtgcgctctttctcagagctcttgcgtctaaataaagtgtctggaaaatgtcgtctggtgctaactagtataaataaactcacttgtattctacac
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