1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaatgactcatccgagcaagctctttgagtgaaggcgttttctgtccgactattttgattcctcggtgacaatcacagtccctgtttgcttcggtcggtagtttattgatatcaaccgctgctccttcttaacccgtattctcacctacgacatctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCACAATCGCAGTGGCCGCAGGTGCTTGTGCTCCTGCTACTGGACCTCGTCAA
species | Physcomitrella patens |
transcript | PP1S77_25V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGCGTAACGGCGTTATGATGTGAGGGTTTGAGGTTTAAGAGATCCCAG ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCACEST: gi|100383604|gb|BY950388.1|BY950388
genomic: TGTGCGTAACGGCGTTATGATGTGAGGGTTTGAGGTTTAAGAGATCCCAGgtgaatgact ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
EST: TGTGCGTAACGGCGTTATGATGTGAGGGTTTGAGGTTTAAGAGATCCCAG ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCACEST: gi|162155572|gb|FC331016.1|FC331016
genomic: TGTGCGTAACGGCGTTATGATGTGAGGGTTTGAGGTTTAAGAGATCCCAGgtgaatgact ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
EST: TGTGCGTAACGGCGTTATGATGTGAGGGTTTGAGGTTTAAGAGATCCCAG ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
genomic: TGTGCGTAACGGCGTTATGATGTGAGGGTTTGAGGTTTAAGAGATCCCAGgtgaatgact ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
tatcaaccgctgctccttcttaacccgtattctcacctacgacatctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCACAATCGCAGTGGCCGCAGGTGCTTGTGCTCCTGCTACTGGACCTCGTCAA
ttctcac putative branch site (score: 9)
catctctct putative PPT
ttcttaa TA-rich tract