1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGGCTCTCACGTCGCTTCTCGATTAAAGCCCCCAGTGATCGTGATGACCGGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAGgtgagtgtccatttcagcacggtgttgattggtgagggtggagctgtacgaaatcgagccaatgatttacctctccatgttatgaaagttttaaccgatgaccatctttggaaatgctgatgctattttttcagccttttggcggcaatcggacttttttttagattcttagatgtatggttttacatctcatgcag
species | Physcomitrella patens |
transcript | PP1S77_25V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGAC-TTGCTGAG GTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCTEST: gi|100417032|gb|BY993210.1|BY993210
genomic: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAGgtgagtgtcc ... tctcatgcagGTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCT
EST: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAA GTCCG-AGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCEST: gi|162167138|gb|FC343614.1|FC343614
genomic: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAGgtgagtgtcc ... tctcatgcagGTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCC
EST: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAG GTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCTACAGGGEST: gi|37831487|gb|BJ589499.1|BJ589499
genomic: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAGgtgagtgtcc ... tctcatgcagGTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCTACAGGG
EST: GGGCTGGACCCCTCTACAATGTTGCCGCTCGACGAGGAGACCTTGCTGAG GTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCTACAGGGEST: gi|162154471|gb|FC330473.1|FC330473
genomic: GGGCTGGACCCCTCTAC-ATGTTGCCGCTCGACGAGGAGACCTTGCTGAGgtgagtgtcc ... tctcatgcagGTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCTACAGGG
EST: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAG TTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCTACAGGG
genomic: GGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAGgtgagtgtcc ... tctcatgcagGTCCGGAGGCTCATTGACGCTGGAGCCAACGTGAACGAGCCTTCTACAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCTCTCACGTCGCTTCTCGATTAAAGCCCCCAGTGATCGTGATGACCGGGGCTGGACCCCTCTACATGTTGCCGCTCGACGAGGAGACCTTGCTGAGgtgagtgtccatttcagcacggtgttgattggtgagggtggagctgtacgaaatcgagccaatgatttacctctccatgttatgaaagttttaaccgatgaccatctttggaaatgctgatgctattttttcagccttttggcggcaatcggacttttttttagattcttagatgtatggttttacatctcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA