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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCTAGCTTGCTTCCTTTGACCTTCCCCCTCCCTCGCGGATTCATCATCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAGgtattcttccttctctgattccgagccacgctgtttcagttccgtcggaaatgttatgtacctcctccctcgagatttttctatgttctgttgtgcatgt...

Basic information

species Physcomitrella patens
transcript PP1S77_25V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100368439|gb|BY967013.1|BY967013
EST:     TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAG                         ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
genomic: TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAGgtattcttcc ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
EST: gi|162186891|gb|FC363135.1|FC363135
EST:     TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAG                         ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
genomic: TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAGgtattcttcc ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
EST: gi|100417032|gb|BY993210.1|BY993210
EST:     TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAG                         ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
genomic: TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAGgtattcttcc ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
EST: gi|162154472|gb|FC330474.1|FC330474
EST:     TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAG                         ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
genomic: TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAGgtattcttcc ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
EST: gi|100441074|gb|BY980695.1|BY980695
EST:     TCCTCCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAG                         ATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC
genomic: TCCTTCACGGCACCACATGGCGTCATCGTGCTCCTGACTACACCAATTAGgtattcttcc ... ctctctgcagATTGGACTGTCTGGATTCCTTGTTAGCATTGAAAAATCGCTCCGAGAGCAC