1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGTTATTGCGACCTGTGCTTGCACATGTCGCTGGAACGACAAGAAGCAGGTGGAAGGCTTGAATGCCACCATAATTGGACTCGGTTGCATTCTCGGCTGgtgagattttaacgatcgctagcacattgtcatttgtaaagcgtaaagactcatcaactctggaaggaagtaaggtctgcgtattcgtttatttatgtggatgtgtatgcattcacggaaagctgatgtgaaaatgatgatggttgtctgcag
species | Physcomitrella patens |
transcript | PP1S77_215V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGGAAGGCTTGAATGCCACCATAATTGGACTCGGTTGCATTCTCGGCTG TTTTGCCTCTGGTTTGGCTGCAGCGTTTTTCGCCTCTGGCAGCGCACTGAGEST: gi|162174067|gb|FC350582.1|FC350582
genomic: GTGGAAGGCTTGAATGCCACCATAATTGGACTCGGTTGCATTCTCGGCTGgtgagatttt ... ttgtctgcagTTTTGCCTCTGGTTTGGCTGCAGCGTTTTTCGCCTCTGGCAGCGCACTGAG
EST: GTGGAAGGCTTGAATGCCACCATAATTGGACTCGGTTGCATTCTCGGCTG TTTTGCCTCTGGTTTGGCTGCAGCGTTTTTCGCCTCTGGCAGCGCACTGAG
genomic: GTGGAAGGCTTGAATGCCACCATAATTGGACTCGGTTGCATTCTCGGCTGgtgagatttt ... ttgtctgcagTTTTGCCTCTGGTTTGGCTGCAGCGTTTTTCGCCTCTGGCAGCGCACTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTATTGCGACCTGTGCTTGCACATGTCGCTGGAACGACAAGAAGCAGGTGGAAGGCTTGAATGCCACCATAATTGGACTCGGTTGCATTCTCGGCTGgtgagattttaacgatcgctagcacattgtcatttgtaaagcgtaaagactcatcaactctggaaggaagtaaggtctgcgtattcgtttatttatgtggatgtgtatgcattcacggaaagctgatgtgaaaatgatgatggttgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG