1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgggtgttccgcagagatgccttcggtgcaggtctttgcttcctctgcttcttcttcttcttcttccactcatttgtctcaccgctcacgtcacaccttgaagtctttcaaatccgttctagagtgtgttgaatggcgtgcagCGATGATGGAAATATTTGAGTTCCTTGATTGAACGTGGGGTGAGAGGACTTATCGAAGAGCGAGGAGGCAGACTGTAGGAGCGAATAGTTTTGTTGCGAG
species | Physcomitrella patens |
transcript | PP1S77_215V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCGACCGGGGAAGAGACATGTGTTAGATGGCATCTGAATGAAGTGCCAG CGATGATGGAAATATTTGAGTTCCTTGATTGAACGTGGGGTGAGAGGACTTEST: gi|18364612|gb|BJ196685.1|BJ196685
genomic: TGCGACCGGGGAAGAGACATGTGTTAGATGGCATCTGAATGAAGTGCCAGgtgggtgttc ... tggcgtgcagCGATGATGGAAATATTTGAGTTCCTTGATTGAACGTGGGGTGAGAGGACTT
EST: TGCGACCGGGGAAGAGACATGTGTTAGATGGCATCTGAATGAAGTGCCAG CGATGATGGAAATATTTGAGTTCCTTGATTGAACGTGGGGTGAGAGGACTT
genomic: TGCGACCGGGGAAGAGACATGTGTTAGATGGCATCTGAATGAAGTGCCAGgtgggtgttc ... tggcgtgcagCGATGATGGAAATATTTGAGTTCCTTGATTGAACGTGGGGTGAGAGGACTT
cgtcacaccttgaagtctttcaaatccgttctagagtgtgttgaatggcgtgcagCGATGATGGAAATATTTGAGTTCCTTGATTGAACGTGGGGTGAGAGGACTTATCGAAGAGCGAGGAGGCAGACTGTAGGAGCGAATAGTTTTGTTGCGAG
tttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgttccgcagagatgccttcggtgcaggtctttgcttcctctgcttcttcttcttcttcttccactcatttgtctcaccgctcacgtcacaccttgaagtctttcaaatccgttctagagtgtgttgaatggcgtgcagCGATGATGGAAATATTTGAGTTCCTTGATTGAACGTGGGGTGAGAGGACTTATCGAAGAGCGAGGAGGCAGACTGTAGGAGCGAATAGTTTTGTTGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG