1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTCTGGCAATGGGATTACTTGTGGGATCAGAACCTTTGCTTTGGGCCTTGGGTGTCAGCTTCGTTCTTGGGACTGCGTATTCGGCCGATgtgagtttccacccttctaggaacctgaaacacaatattagcatgatgtactgaattggtcttctataatcgcttcgtaataggctgggtgctgtaaaac...
species | Physcomitrella patens |
transcript | PP1S77_205V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTCGTTCTTGGGACTGCGTATTCGGCCGAT ATTCCAATGCTACGGTGGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATTEST: gi|208372492|gb|DC948732.1|DC948732
genomic: TTCGTTCTTGGGACTGCGTATTCGGCCGATgtgagtttcc ... attctttcagATTCCAATGCTACGGTGGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATT
EST: TATTCGGCCGAT ATTCCAATGNTACGGTGGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATTEST: gi|162270283|gb|FC447295.1|FC447295
genomic: TATTCGGCCGATgtgagtttcc ... attctttcagATTCCAATGCTACGGTGGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATT
EST: GGACTGCGTATTCGGCCGAT ATTCCAATGCTACGG-GGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATT
genomic: GGACTGCGTATTCGGCCGATgtgagtttcc ... attctttcagATTCCAATGCTACGGTGGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTGGCAATGGGATTACTTGTGGGATCAGAACCTTTGCTTTGGGCCTTGGGTGTCAGCTTCGTTCTTGGGACTGCGTATTCGGCCGATgtgagtttccacccttctaggaacctgaaacacaatattagcatgatgtactgaattggtcttctataatcgcttcgtaataggctgggtgctgtaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacacaa